PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PH01001360G0530
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Bambusoideae; Arundinarodae; Arundinarieae; Arundinariinae; Phyllostachys
Family ERF
Protein Properties Length: 269aa    MW: 29221.9 Da    PI: 6.3043
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PH01001360G0530genomeICBRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP264.72e-2094143255
              AP2   2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                       y+GVr+++ +g+WvAeIr p++   r+r +lg+f+taeeAa a++ a+ +l+g
  PH01001360G0530  94 LYRGVRQRH-WGKWVAEIRLPRN---RTRLWLGTFDTAEEAALAYDSAAFRLRG 143
                      59******9.**********955...5*************************98 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000187.54E-3593153No hitNo description
PROSITE profilePS5103223.60494151IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.105.2E-3394152IPR001471AP2/ERF domain
SMARTSM003801.8E-3894157IPR001471AP2/ERF domain
SuperFamilySSF541715.69E-2394152IPR016177DNA-binding domain
PfamPF008471.2E-1495143IPR001471AP2/ERF domain
PRINTSPR003672.2E-1195106IPR001471AP2/ERF domain
PRINTSPR003672.2E-11117133IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 269 aa     Download sequence    Send to blast
MTTTIDWHGC NTNLPAALYG MLDSKQVMQA LTPPMVQDAP TISFSYPCSG VKQSAGLLLG  60
ANYQLTPAQI IEIQSKLHHM RRPSALPARP AAKLYRGVRQ RHWGKWVAEI RLPRNRTRLW  120
LGTFDTAEEA ALAYDSAAFR LRGDSARLNF PELRRGGAHL GPPLHAAVDA KLHAICHGMD  180
LPQQSQSTTT AVTPSSFSSE SPDVKSEPGC SGSESSSSAD GDVSSTGSSD VIPEMQLLDF  240
SEAPWDESES FLLRKYPSLE IDWDAILS*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1gcc_A1e-2193151160ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1
2gcc_A1e-2192151363ATERF1
3gcc_A1e-2192151363ATERF1
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC2191851e-170AC219185.1 Oryza officinalis clone OO__Ba0118D01, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqNP_001141968.11e-134putative AP2/EREBP transcription factor superfamily protein
SwissprotO656654e-62ERF60_ARATH; Ethylene-responsive transcription factor ERF060
SwissprotQ8H1E42e-61RAP24_ARATH; Ethylene-responsive transcription factor RAP2-4
TrEMBLB4FZ511e-134B4FZ51_MAIZE; AP2-EREBP transcription factor
STRINGGRMZM2G113060_P011e-134(Zea mays)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP38235203
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G39780.17e-49ERF family protein